If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ), 'gf_id' => 'HOM05D000782', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000782' ), 'data_identifier' => 'HOM05D000782', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000782', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '754', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37360' => 'bna', 'A03p00110' => 'bna', 'A03p16910' => 'bna', 'A03p36830' => 'bna', 'A03p37270' => 'bna', 'A04p03980' => 'bna', 'A07p22810' => 'bna', 'A09p25370' => 'bna', 'A09p49150' => 'bna', 'A09p59740' => 'bna', 'A10p28760' => 'bna', 'Aa31LG10G11060' => 'aar', 'Aa31LG1G23390' => 'aar', 'Aa31LG1G23400' => 'aar', 'Aa31LG1G23410' => 'aar', 'Aa31LG3G4120' => 'aar', 'Aa31LG3G4130' => 'aar', 'Aa31LG8G3970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.790' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.791' => 'aag', 'Actinidia11537' => 'ach', 'Actinidia20779' => 'ach', 'Actinidia20780' => 'ach', 'Actinidia29055' => 'ach', 'Actinidia29056' => 'ach', 'Actinidia32552' => 'ach', 'Actinidia32553' => 'ach', 'Actinidia32599' => 'ach', 'Ah.08g215420' => 'amhyb', 'AL1G48330' => 'aly', 'AL3G22552' => 'aly', 'AL3G23300' => 'aly', 'AL3G29870' => 'aly', 'AL4G25120' => 'aly', 'AL5G37500' => 'aly', 'AL6G10280' => 'aly', 'AL8G21470' => 'aly', 'Aqoxy1G00416' => 'aox', 'Aqoxy1G00420' => 'aox', 'Aqoxy3G02343' => 'aox', 'Aqoxy4G00262' => 'aox', 'Aqoxy4G00264' => 'aox', 'Aqoxy4G02163' => 'aox', 'Aqoxy4G02164' => 'aox', 'Aqoxy4G02165' => 'aox', 'Aqoxy4G02166' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2NA10N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM9MH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35R1UP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6B6LV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6VAW0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I9PPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89W0PE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.969K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGG0WC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E54J1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2ZQLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1IHCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH3BQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDS6QA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKME34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6RHTL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NRMQ9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8Q2FQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8EST8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TG1GNW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TYE7C9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VG7N3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS4JL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XN73VW' => 'arhy', 'AT1G33840' => 'ath', 'AT2G14560' => 'ath', 'AT2G30270' => 'ath', 'AT3G10986' => 'ath', 'AT3G11740' => 'ath', 'AT3G16900' => 'ath', 'AT3G56180' => 'ath', 'AT5G01750' => 'ath', 'ATR0681G158' => 'atr', 'Atru.chr1.2094' => 'acertr', 'Atru.chr12.129' => 'acertr', 'Atru.chr12.135' => 'acertr', 'Atru.chr7.205' => 'acertr', 'Atru.chr8.2449' => 'acertr', 'Atru.chr8.2458' => 'acertr', 'AUR62009715' => 'cqu', 'AUR62022978' => 'cqu', 'BcaB01g00022' => 'bca', 'BcaB01g06118' => 'bca', 'BcaB01g06251' => 'bca', 'BcaB02g07666' => 'bca', 'BcaB02g08382' => 'bca', 'BcaB03g14483' => 'bca', 'BcaB03g14485' => 'bca', 'BcaB03g15790' => 'bca', 'BcaB04g18616' => 'bca', 'BcaB04g18659' => 'bca', 'BcaB04g21120' => 'bca', 'BcaB05g25311' => 'bca', 'BcaC01g04087' => 'bca', 'BcaC01g04149' => 'bca', 'BcaC01g06019' => 'bca', 'BcaC02g08234' => 'bca', 'BcaC02g09810' => 'bca', 'BcaC03g13089' => 'bca', 'BcaC06g32529' => 'bca', 'BcaC07g39933' => 'bca', 'BcaC07g41298' => 'bca', 'BcaC07g41301' => 'bca', 'BcaC08g44764' => 'bca', 'BcaC09g48200' => 'bca', 'BcaC09g48648' => 'bca', 'BcaNung04210' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00140' => 'bna', 'BolC1t04699H' => 'bol', 'BolC1t05294H' => 'bol', 'BolC1t05340H' => 'bol', 'BolC2t06005H' => 'bol', 'BolC3t12602H' => 'bol', 'BolC3t14370H' => 'bol', 'BolC3t16723H' => 'bol', 'BolC3t16777H' => 'bol', 'BolC4t25175H' => 'bol', 'BolC4t27226H' => 'bol', 'BolC6t37510H' => 'bol', 'BolC8t50769H' => 'bol', 'BolC8t51863H' => 'bol', 'BolC8t51864H' => 'bol', 'BolC9t59652H' => 'bol', 'BraA01t03794Z' => 'bra', 'BraA01t04163Z' => 'bra', 'BraA01t04209Z' => 'bra', 'BraA02t04679Z' => 'bra', 'BraA03t09400Z' => 'bra', 'BraA03t10980Z' => 'bra', 'BraA03t12846Z' => 'bra', 'BraA03t12887Z' => 'bra', 'BraA04t16118Z' => 'bra', 'BraA07t29946Z' => 'bra', 'BraA09t40368Z' => 'bra', 'BraA09t41350Z' => 'bra', 'BraA09t41351Z' => 'bra', 'BraA10t44923Z' => 'bra', 'C01p47290' => 'bna', 'C02p00070' => 'bna', 'C03p00260' => 'bna', 'C03p19910' => 'bna', 'C03p44560' => 'bna', 'C03p45130' => 'bna', 'C04p36360' => 'bna', 'C06p23360' => 'bna', 'C08p31490' => 'bna', 'C08p31500' => 'bna', 'C08p43080' => 'bna', 'C09p69090' => 'bna', 'CAN.G1095.28' => 'can', 'CAN.G475.4' => 'can', 'CAN.G48.38' => 'can', 'CAN.G508.30' => 'can', 'CAN.G64.4' => 'can', 'CAN.G737.1' => 'can', 'CAN.G738.2' => 'can', 'CAN.G738.4' => 'can', 'CANSAT35G0383' => 'cansat', 'CANSAT35G0618' => 'cansat', 'CANSAT54G1735' => 'cansat', 'CANSAT56G4054' => 'cansat', 'CARHR085580' => 'chi', 'CARHR086290' => 'chi', 'CARHR092180' => 'chi', 'CARHR113120' => 'chi', 'CARHR113130' => 'chi', 'CARHR123590' => 'chi', 'CARHR166330' => 'chi', 'CARHR212110' => 'chi', 'CARHR258060' => 'chi', 'CARHR258070' => 'chi', 'Carub.0002s2182' => 'cru', 'Carub.0003s1028' => 'cru', 'Carub.0003s1108' => 'cru', 'Carub.0003s1663' => 'cru', 'Carub.0004s1143' => 'cru', 'Carub.0005s2296' => 'cru', 'Carub.0006s0008' => 'cru', 'Carub.0006s0589' => 'cru', 'Ca_05681_v3' => 'car', 'Ca_07723_v3' => 'car', 'Ca_07724_v3' => 'car', 'Ca_07729_v3' => 'car', 'Cc01_g15010' => 'ccan', 'Cc06_g00620' => 'ccan', 'CDE06G0912' => 'cde', 'CDE06G1401' => 'cde', 'CDE06G2424' => 'cde', 'Cfa017082' => 'cfa', 'Cfa017085' => 'cfa', 'Cfa017086' => 'cfa', 'Cfa017153' => 'cfa', 'Cfa026540' => 'cfa', 'Ciclev10002580m.g' => 'ccl', 'Ciclev10012456m.g' => 'ccl', 'Ciclev10012677m.g' => 'ccl', 'Ciclev10012705m.g' => 'ccl', 'Ciclev10012729m.g' => 'ccl', 'Ciclev10012737m.g' => 'ccl', 'Ciclev10012901m.g' => 'ccl', 'Ciclev10013687m.g' => 'ccl', 'Ciclev10032774m.g' => 'ccl', 'CiPaw.01G303600' => 'cil', 'CiPaw.10G162000' => 'cil', 'CiPaw.10G162200' => 'cil', 'CiPaw.10G162400' => 'cil', 'CiPaw.10G162500' => 'cil', 'CiPaw.10G162600' => 'cil', 'CiPaw.10G162800' => 'cil', 'CiPaw.10G162900' => 'cil', 'CiPaw.10G163000' => 'cil', 'CiPaw.13G067500' => 'cil', 'CiPaw.14G053200' => 'cil', 'ClCG03G000180' => 'cla', 'ClCG08G003160' => 'cla', 'ClCG10G022570' => 'cla', 'COL.COLO4_03319' => 'col', 'COL.COLO4_03434' => 'col', 'COL.COLO4_04217' => 'col', 'COL.COLO4_06871' => 'col', 'COL.COLO4_06872' => 'col', 'COL.COLO4_06873' => 'col', 'COL.COLO4_06874' => 'col', 'COL.COLO4_11173' => 'col', 'COL.COLO4_11220' => 'col', 'COL.COLO4_24440' => 'col', 'COL.COLO4_25817' => 'col', 'COL.COLO4_25823' => 'col', 'COL.COLO4_32458' => 'col', 'Cpa.g.sc1160.1' => 'cpa', 'Cpa.g.sc19.106' => 'cpa', 'Cpa.g.sc2.336' => 'cpa', 'Cpa.g.sc49.69' => 'cpa', 'CsaV3_3G033260' => 'csa', 'CsaV3_7G022830' => 'csa', 'CSS0016607' => 'camsi', 'CSS0026450' => 'camsi', 'CSS0030563' => 'camsi', 'CSS0042997' => 'camsi', 'DCAR_015455' => 'dca', 'DCAR_015456' => 'dca', 'DCAR_023953' => 'dca', 'DCAR_028900' => 'dca', 'DCAR_028901' => 'dca', 'DCAR_028903' => 'dca', 'DCAR_028904' => 'dca', 'DCAR_028905' => 'dca', 'Dinv10558' => 'din', 'Dinv12248' => 'din', 'Dinv25291' => 'din', 'Dinv35438' => 'din', 'Dinv35439' => 'din', 'Duzib106G0279' => 'dzi', 'Duzib114G0053' => 'dzi', 'Duzib128G0121' => 'dzi', 'Duzib128G2058' => 'dzi', 'Duzib138G0029' => 'dzi', 'Duzib151G0149' => 'dzi', 'Duzib168G2101' => 'dzi', 'Duzib268G0853' => 'dzi', 'Duzib268G1165' => 'dzi', 'Duzib268G1814' => 'dzi', 'ECA236G0449' => 'eca', 'ECA236G0580' => 'eca', 'ECA236G1831' => 'eca', 'ECA236G4495' => 'eca', 'ECA247G1648' => 'eca', 'ECA247G3765' => 'eca', 'ECA247G3886' => 'eca', 'ECA248G2229' => 'eca', 'EL10Ac2g04292' => 'bvu', 'EL10Ac7g15871' => 'bvu', 'Eucgr.A00645' => 'egr', 'Eucgr.A00646' => 'egr', 'Eucgr.K01265' => 'egr', 'Eucgr.K01266' => 'egr', 'Eucgr.K01367' => 'egr', 'FAN02G0506' => 'fan', 'FAN02G2024' => 'fan', 'FAN02G3582' => 'fan', 'FAN05G0058' => 'fan', 'FAN05G4270' => 'fan', 'FAN05G5695' => 'fan', 'FAN09G0140' => 'fan', 'FAN09G1947' => 'fan', 'FAN14G0449' => 'fan', 'FAN14G2230' => 'fan', 'FAN14G3537' => 'fan', 'FAN14G5325' => 'fan', 'FAN21G0593' => 'fan', 'FvH4_3g39960' => 'fve', 'FvH4_6g10350' => 'fve', 'FvH4_6g10360' => 'fve', 'FvH4_6g10370' => 'fve', 'FvH4_6g10371' => 'fve', 'FvH4_6g10380' => 'fve', 'Glyma.01G129000' => 'gma', 'Glyma.01G129100' => 'gma', 'Glyma.02G233000' => 'gma', 'Glyma.03G040900' => 'gma', 'Glyma.03G041000' => 'gma', 'Glyma.09G278800' => 'gma', 'Glyma.09G279000' => 'gma', 'Glyma.14G200600' => 'gma', 'Glyma.16G069500' => 'gma', 'Glyma.16G069700' => 'gma', 'Glyma.16G070101' => 'gma', 'Glyma.18G209800' => 'gma', 'Glyma.18G209900' => 'gma', 'Glyma.18G210000' => 'gma', 'Glyma.U031124' => 'gma', 'Gohir.A03G024700' => 'ghi', 'Gohir.A03G088200' => 'ghi', 'Gohir.A05G304800' => 'ghi', 'Gohir.A05G332400' => 'ghi', 'Gohir.A06G159800' => 'ghi', 'Gohir.A08G097700' => 'ghi', 'Gohir.A08G098800' => 'ghi', 'Gohir.A08G203700' => 'ghi', 'Gohir.A10G147400' => 'ghi', 'Gohir.A10G240600' => 'ghi', 'Gohir.D02G108400' => 'ghi', 'Gohir.D03G143800' => 'ghi', 'Gohir.D04G071100' => 'ghi', 'Gohir.D05G303900' => 'ghi', 'Gohir.D06G165600' => 'ghi', 'Gohir.D08G090100' => 'ghi', 'Gohir.D08G090200' => 'ghi', 'Gohir.D08G090500' => 'ghi', 'Gohir.D08G090550' => 'ghi', 'Gohir.D08G221000' => 'ghi', 'Gohir.D10G118700' => 'ghi', 'Gohir.D10G252800' => 'ghi', 'Gorai.003G151100' => 'gra', 'Gorai.004G095100' => 'gra', 'Gorai.004G095200' => 'gra', 'Gorai.004G095500' => 'gra', 'Gorai.004G095800' => 'gra', 'Gorai.004G234700' => 'gra', 'Gorai.005G123000' => 'gra', 'Gorai.009G323200' => 'gra', 'Gorai.010G193100' => 'gra', 'Gorai.011G130500' => 'gra', 'Gorai.011G293100' => 'gra', 'Gorai.012G080000' => 'gra', 'GSVIVG01030235001' => 'vvi', 'GSVIVG01030237001' => 'vvi', 'HanXRQChr06g0175471' => 'han', 'HanXRQChr10g0288001' => 'han', 'HanXRQChr10g0305721' => 'han', 'HanXRQChr10g0308011' => 'han', 'HanXRQChr10g0318351' => 'han', 'HanXRQChr11g0328641' => 'han', 'HanXRQChr11g0339921' => 'han', 'HanXRQChr12g0363681' => 'han', 'HanXRQChr12g0363691' => 'han', 'HanXRQChr13g0405201' => 'han', 'HanXRQChr13g0418141' => 'han', 'HanXRQChr13g0418161' => 'han', 'HanXRQChr13g0418901' => 'han', 'HanXRQChr13g0418911' => 'han', 'HanXRQChr13g0418961' => 'han', 'HanXRQChr13g0419151' => 'han', 'HanXRQChr13g0419311' => 'han', 'HanXRQChr13g0419331' => 'han', 'HanXRQChr13g0419341' => 'han', 'HanXRQChr13g0419351' => 'han', 'HanXRQChr15g0463451' => 'han', 'HanXRQChr15g0463461' => 'han', 'HanXRQChr15g0463471' => 'han', 'HanXRQChr16g0509441' => 'han', 'HanXRQChr16g0509451' => 'han', 'HanXRQChr16g0510371' => 'han', 'Haze_06378' => 'cav', 'Haze_21054' => 'cav', 'Haze_21114' => 'cav', 'Haze_24431' => 'cav', 'Haze_27396' => 'cav', 'Hma1.2p1_0174F.1_g077070' => 'hma', 'Hma1.2p1_1281F.1_g272660' => 'hma', 'Hma1.2p1_1421F.1_g282460' => 'hma', 'Hma1.2p1_2300F.1_g319210' => 'hma', 'HPP92_001136' => 'vpl', 'HPP92_007556' => 'vpl', 'HPP92_007557' => 'vpl', 'HPP92_007575' => 'vpl', 'HPP92_022852' => 'vpl', 'HPP92_025117' => 'vpl', 'HPP92_025118' => 'vpl', 'HPP92_026131' => 'vpl', 'Lalb_Chr03g0043661' => 'lal', 'Lalb_Chr10g0103661' => 'lal', 'Lalb_Chr12g0207501' => 'lal', 'Lj1g0007427' => 'lja', 'Lj1g0027513' => 'lja', 'Lj2A1095G46' => 'lonja', 'Lj2A64T52' => 'lonja', 'Lj2A64T53' => 'lonja', 'Lj2A64T54' => 'lonja', 'Lj2P64T40' => 'lonja', 'Lj3A943G21' => 'lonja', 'Lj3g0018258' => 'lja', 'LjContig00141g0026997' => 'lja', 'Lsat_1_v5_gn_0_13600' => 'lsa', 'Lsat_1_v5_gn_0_33241' => 'lsa', 'Lsat_1_v5_gn_5_151221' => 'lsa', 'Lsat_1_v5_gn_5_96600' => 'lsa', 'Lsat_1_v5_gn_5_96620' => 'lsa', 'Lsat_1_v5_gn_5_96800' => 'lsa', 'Lsat_1_v5_gn_7_78200' => 'lsa', 'Lsat_1_v5_gn_7_79361' => 'lsa', 'Lsat_1_v5_gn_8_105980' => 'lsa', 'Lsat_1_v5_gn_8_106020' => 'lsa', 'Lsat_1_v5_gn_8_108720' => 'lsa', 'Lsat_1_v5_gn_8_110521' => 'lsa', 'Lsat_1_v5_gn_8_110560' => 'lsa', 'Lsat_1_v5_gn_8_110600' => 'lsa', 'Lsat_1_v5_gn_8_110620' => 'lsa', 'Lsat_1_v5_gn_9_38141' => 'lsa', 'Manes.07G136800' => 'mes', 'Manes.09G114200' => 'mes', 'Manes.09G114300' => 'mes', 'Manes.09G114400' => 'mes', 'Manes.10G006900' => 'mes', 'Manes.10G008300' => 'mes', 'Manes.18G126600' => 'mes', 'Mapoly0001s0475' => 'mpo', 'Mapoly0004s0014' => 'mpo', 'Mapoly0016s0117' => 'mpo', 'Mapoly0031s0002' => 'mpo', 'Mapoly0031s0006' => 'mpo', 'Mapoly0031s0010' => 'mpo', 'Mapoly0031s0012' => 'mpo', 'Mapoly0031s0017' => 'mpo', 'Mapoly0031s0018' => 'mpo', 'Mapoly0031s0022' => 'mpo', 'Mapoly0034s0065' => 'mpo', 'Mapoly0050s0057' => 'mpo', 'Mapoly0073s0011' => 'mpo', 'Mapoly0075s0010' => 'mpo', 'Mapoly0085s0018' => 'mpo', 'Mapoly0180s0013' => 'mpo', 'Mapoly0180s0020' => 'mpo', 'Mapoly0180s0022' => 'mpo', 'Mapoly0184s0026' => 'mpo', 'Mapoly0211s0003' => 'mpo', 'Mapoly0211s0007' => 'mpo', 'Mapoly0211s0009' => 'mpo', 'Mapoly0211s0010' => 'mpo', 'Mapoly0211s0011' => 'mpo', 'MBI15_g13922_MAGBIO' => 'mbi', 'MBI15_g20019_MAGBIO' => 'mbi', 'MBI15_g43140_MAGBIO' => 'mbi', 'MD03G1058200' => 'mdo', 'MD04G1169200' => 'mdo', 'MD04G1169400' => 'mdo', 'MD11G1060400' => 'mdo', 'MD12G1182900' => 'mdo', 'MD12G1183000' => 'mdo', 'MD12G1183400' => 'mdo', 'MD17G1185800' => 'mdo', 'Medtr1g014150' => 'mtr', 'Medtr1g014160' => 'mtr', 'Medtr1g014180' => 'mtr', 'Medtr4g029430' => 'mtr', 'Medtr5g074550' => 'mtr', 'Medtr5g074560' => 'mtr', 'Medtr7g071710' => 'mtr', 'Medtr7g072120' => 'mtr', 'Medtr7g072140' => 'mtr', 'Medtr7g072170' => 'mtr', 'Medtr7g072250' => 'mtr', 'Medtr7g072270' => 'mtr', 'MELO3C009119.2' => 'cme', 'MELO3C024977.2' => 'cme', 'Migut.J00076' => 'egut', 'Migut.J00077' => 'egut', 'Migut.J00078' => 'egut', 'Migut.J00079' => 'egut', 'Migut.K00916' => 'egut', 'Migut.N00751' => 'egut', 'MSTRG.12694' => 'ama', 'MSTRG.5525' => 'ama', 'MSTRG.5527' => 'ama', 'Nitab4.5_0000047g0040' => 'nta', 'Nitab4.5_0000263g0120' => 'nta', 'Nitab4.5_0000299g0130' => 'nta', 'Nitab4.5_0000381g0020' => 'nta', 'Nitab4.5_0000928g0080' => 'nta', 'Nitab4.5_0002768g0070' => 'nta', 'Nitab4.5_0003270g0030' => 'nta', 'Nitab4.5_0003592g0020' => 'nta', 'Nitab4.5_0004057g0010' => 'nta', 'Nitab4.5_0011965g0010' => 'nta', 'Nn2g11061' => 'nnu', 'Nn2g11064' => 'nnu', 'Nn2g11070' => 'nnu', 'Nn2g13302' => 'nnu', 'Oeu017757.1' => 'oeu', 'Oeu026178.1' => 'oeu', 'Oeu026179.1' => 'oeu', 'Oeu050028.1' => 'oeu', 'Oeu050030.1' => 'oeu', 'Oeu064891.1' => 'oeu', 'Os03g0816700' => 'osa', 'Os03g0816800' => 'osa', 'Os05g0339200' => 'osa', 'Os07g0230700' => 'osa', 'Peaxi162Scf00009g00812' => 'pax', 'Peaxi162Scf00009g00813' => 'pax', 'Peaxi162Scf00126g00324' => 'pax', 'Peaxi162Scf00284g00121' => 'pax', 'Peaxi162Scf00390g00530' => 'pax', 'Peaxi162Scf00744g00118' => 'pax', 'Peaxi162Scf00744g00119' => 'pax', 'Peaxi162Scf00744g00120' => 'pax', 'Peaxi162Scf00744g00121' => 'pax', 'Peaxi162Scf01691g00011' => 'pax', 'Peaxi162Scf61004g00001' => 'pax', 'PGR031G3631' => 'pgr', 'PGSC0003DMG400011039' => 'stu', 'PGSC0003DMG400017031' => 'stu', 'PGSC0003DMG400023141' => 'stu', 'PGSC0003DMG400026614' => 'stu', 'PGSC0003DMG400029151' => 'stu', 'PGSC0003DMG400030460' => 'stu', 'Phvul.008G088300' => 'pvu', 'Phvul.008G088400' => 'pvu', 'Phvul.008G088500' => 'pvu', 'Phvul.008G088700' => 'pvu', 'Phvul.008G088800' => 'pvu', 'Phvul.008G088901' => 'pvu', 'Phvul.008G089000' => 'pvu', 'Phvul.008G089200' => 'pvu', 'Phvul.008G089300' => 'pvu', 'Phvul.008G089400' => 'pvu', 'Phvul.008G219000' => 'pvu', 'Phvul.008G250800' => 'pvu', 'Phvul.010G061200' => 'pvu', 'Potri.008G075100' => 'ptr', 'Potri.010G182300' => 'ptr', 'Potri.016G130400' => 'ptr', 'Potri.016G130500' => 'ptr', 'Potri.016G130700' => 'ptr', 'Potri.016G130800' => 'ptr', 'Potri.016G131100' => 'ptr', 'Potri.016G131300' => 'ptr', 'Potri.016G131400' => 'ptr', 'Potri.016G131500' => 'ptr', 'Potri.016G131600' => 'ptr', 'Potri.016G131701' => 'ptr', 'Potri.016G131800' => 'ptr', 'Potri.016G131850' => 'ptr', 'Potri.019G126300' => 'ptr', 'Pp3c12_25900' => 'ppa', 'Pp3c12_25910' => 'ppa', 'Pp3c12_8960' => 'ppa', 'Pp3c13_8700' => 'ppa', 'Pp3c16_3330' => 'ppa', 'Pp3c1_37850' => 'ppa', 'Prupe.6G045600' => 'ppe', 'Prupe.6G287400' => 'ppe', 'Prupe.6G287500' => 'ppe', 'Prupe.6G287600' => 'ppe', 'Prupe.6G287800' => 'ppe', 'Prupe.6G287900' => 'ppe', 'Psat0s2794g0120' => 'psa', 'Psat0s4838g0040' => 'psa', 'Psat1g155400' => 'psa', 'Psat3g121480' => 'psa', 'Psat3g121560' => 'psa', 'Psat6g026120' => 'psa', 'Psat6g026160' => 'psa', 'Psat7g228880' => 'psa', 'PSO017G1318' => 'pso', 'PSO017G2384' => 'pso', 'PSO017G2589' => 'pso', 'PSO017G2627' => 'pso', 'PSO017G2804' => 'pso', 'PSO017G3119' => 'pso', 'PSO017G3160' => 'pso', 'PSO017G3624' => 'pso', 'PSO017G3674' => 'pso', 'PSO017G4811' => 'pso', 'PSO017G5530' => 'pso', 'PSO017G6007' => 'pso', 'PSO017G6657' => 'pso', 'PSO017G6787' => 'pso', 'PSO063G2747' => 'pso', 'PSO063G4648' => 'pso', 'PSO170G1081' => 'pso', 'PSO170G1147' => 'pso', 'PSO170G4694' => 'pso', 'PSO170G5746' => 'pso', 'PSO170G6702' => 'pso', 'PSO339G0715' => 'pso', 'PSO339G1640' => 'pso', 'PSO384G1515' => 'pso', 'PSO384G4609' => 'pso', 'PSO384G4945' => 'pso', 'QL01p025713' => 'qlo', 'QL04p095962' => 'qlo', 'QL04p095983' => 'qlo', 'QL07p033303' => 'qlo', 'QL07p033307' => 'qlo', 'QL07p033337' => 'qlo', 'QL07p033341' => 'qlo', 'RcHm_v2.0_Chr3g0461171' => 'rch', 'RcHm_v2.0_Chr3g0461181' => 'rch', 'RcHm_v2.0_Chr3g0461221' => 'rch', 'RcHm_v2.0_Chr3g0461231' => 'rch', 'RcHm_v2.0_Chr3g0461241' => 'rch', 'RcHm_v2.0_Chr3g0461261' => 'rch', 'RcHm_v2.0_Chr5g0071971' => 'rch', 'Rhsim05G0218400' => 'rsi', 'Rhsim05G0227600' => 'rsi', 'Rhsim05G0227700' => 'rsi', 'Rhsim05G0227800' => 'rsi', 'Rhsim05G0227900' => 'rsi', 'Rhsim13G0062600' => 'rsi', 'Sabra04G0149400' => 'sbr', 'Sabra04G0149500' => 'sbr', 'Sabra04G0149700' => 'sbr', 'Sabra04G0149800' => 'sbr', 'Sabra04G0149900' => 'sbr', 'Sabra08G0055600' => 'sbr', 'Sabra08G0056100' => 'sbr', 'Sabra10G0139600' => 'sbr', 'Sabra19G0124100' => 'sbr', 'Sabra19G0130500' => 'sbr', 'SalBow2G3499' => 'sbo', 'SalBow5G0504' => 'sbo', 'SalBow5G1622' => 'sbo', 'SalBow5G2323' => 'sbo', 'SalBow5G2396' => 'sbo', 'SalBow5G3000' => 'sbo', 'SalBow5G3220' => 'sbo', 'SalBow5G3727' => 'sbo', 'Sc14g0005600' => 'sci', 'Sc21g0004900' => 'sci', 'Sed0004158' => 'sed', 'Sed0019692' => 'sed', 'Sed0021709' => 'sed', 'Sed0025193' => 'sed', 'SEGI_02032' => 'sgi', 'SEGI_04876' => 'sgi', 'SEGI_07804' => 'sgi', 'SEGI_09718' => 'sgi', 'SEGI_12134' => 'sgi', 'SEGI_26723' => 'sgi', 'SEGI_28640' => 'sgi', 'SEGI_32147' => 'sgi', 'SEGI_35763' => 'sgi', 'SEGI_38654' => 'sgi', 'SGA_v2.0_scaffold120G32965' => 'sas', 'SGA_v2.0_scaffold373G50166' => 'sas', 'SGA_v2.0_scaffold373G50167' => 'sas', 'SGA_v2.0_scaffold85G26662' => 'sas', 'SGA_v2.0_scaffold85G26663' => 'sas', 'SHI19227' => 'shi', 'SHI28865' => 'shi', 'SHI28866' => 'shi', 'SMO111G0105' => 'smo', 'SMO117G0262' => 'smo', 'SMO141G0256' => 'smo', 'Solyc06g050810.3' => 'sly', 'Solyc06g082380.3' => 'sly', 'Solyc09g014800.3' => 'sly', 'Solyc09g014820.3' => 'sly', 'Solyc09g014830.3' => 'sly', 'Solyc09g014860.3' => 'sly', 'Solyc09g014910.4' => 'sly', 'Solyc10g085420.3' => 'sly', 'Sopen06g016490' => 'spe', 'Sopen06g033770' => 'spe', 'Sopen09g007690' => 'spe', 'Sopen09g007770' => 'spe', 'Sopen09g007830' => 'spe', 'Sopen10g034870' => 'spe', 'Sp3g09330' => 'spa', 'Sp3g09970' => 'spa', 'Sp3g15140' => 'spa', 'Sp3g28980' => 'spa', 'Sp4g12850' => 'spa', 'Sp5g06320' => 'spa', 'Sp6g41010' => 'spa', 'TAR369G0987' => 'tar', 'TAR623G0287' => 'tar', 'TAR623G0969' => 'tar', 'TAR623G1064' => 'tar', 'TAR623G1242' => 'tar', 'TAR623G1291' => 'tar', 'THA.LOC104800764' => 'tha', 'THA.LOC104802599' => 'tha', 'THA.LOC104810132' => 'tha', 'THA.LOC104823312' => 'tha', 'Thecc.04G157000' => 'tca', 'Thecc.04G157100' => 'tca', 'Thecc.04G157200' => 'tca', 'Thecc.04G157300' => 'tca', 'Thecc.09G359700' => 'tca', 'Thecc.09G364400' => 'tca', 'Thecc.10G007200' => 'tca', 'Thecc.10G007400' => 'tca', 'Thecc.10G008100' => 'tca', 'Thhalv10006240m.g' => 'esa', 'Thhalv10014621m.g' => 'esa', 'Thhalv10017277m.g' => 'esa', 'Thhalv10021606m.g' => 'esa', 'Thhalv10022341m.g' => 'esa', 'Thhalv10022413m.g' => 'esa', 'Thhalv10025938m.g' => 'esa', 'Thhalv10026191m.g' => 'esa', 'Thhalv10026215m.g' => 'esa', 'Thhalv10028998m.g' => 'esa', 'TPR.G25342' => 'tpr', 'TPR.G35292' => 'tpr', 'TPR.G38868' => 'tpr', 'TPR.G38919' => 'tpr', 'TPR.G5019' => 'tpr', 'TPR.G7469' => 'tpr', 'TWI77G0877' => 'twi', 'TWI79G1409' => 'twi', 'unitig_26.g10210' => 'ugi', 'unitig_26.g10211' => 'ugi', 'unitig_747.g21758' => 'ugi', 'vmacro02905' => 'vma', 'vmacro08921' => 'vma', 'vmacro20341' => 'vma', 'vmacro20342' => 'vma', 'VMungo0331G0810' => 'vmu', 'VMungo0647G1733' => 'vmu', 'VMungo0647G2326' => 'vmu', 'VMungo0925G0001' => 'vmu', 'VMungo1383G0130' => 'vmu', 'VMungo1383G0308' => 'vmu', 'VMungo1383G0870' => 'vmu', 'VMungo1383G2135' => 'vmu', 'VMungo1383G3630' => 'vmu', 'VMungo1383G3666' => 'vmu', 'Zm00001eb007970' => 'zma', 'Zm00001eb062300' => 'zma', 'Zm00001eb095030' => 'zma', 'Zm00001eb112120' => 'zma', 'Zm00001eb228400' => 'zma', 'Zm00001eb286650' => 'zma', 'Zm00001eb303760' => 'zma', 'Zm00001eb435590' => 'zma' ) $gf_id = 'HOM05D000782' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000782' ) $data_identifier = 'HOM05D000782' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 1, 'aly' => (int) 8, 'aox' => (int) 9, 'arhy' => (int) 24, 'ath' => (int) 8, 'atr' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 2, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 4, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 11, 'cla' => (int) 3, 'col' => (int) 13, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 4, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 13, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 2, 'han' => (int) 26, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 8, 'lal' => (int) 3, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 16, 'mes' => (int) 7, 'mpo' => (int) 24, 'mbi' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 2, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 6, 'pvu' => (int) 13, 'ptr' => (int) 15, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 10, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 6, 'twi' => (int) 2, 'ugi' => (int) 3, 'vma' => (int) 4, 'vmu' => (int) 10, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb435590' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1